Reformat Custom Case Data for Model Input

Adds required columns to custom case data to align with internal formatting expectations for disease modeling.

Usage

reformat_cases(custom_data, iso, disease)

Arguments

custom_data

A data frame of user-supplied case data.

iso

Character string; the 3-letter ISO country code (e.g., "ETH").

disease

Character string; the disease name (e.g., "measles").

Value

A data frame with standardized columns: iso3, name, disease_short, and disease_description.

Examples

reformat_cases(data.frame(year = 2000:2002, value = c(100, 120, 80)), "KEN", "measles")
#>   year value iso3 name disease_short disease_description
#> 1 2000   100  KEN  KEN       measles             measles
#> 2 2001   120  KEN  KEN       measles             measles
#> 3 2002    80  KEN  KEN       measles             measles